Calculating
Error Rates
substitution
insertion
deletion
atggat*agtataacgtcaggctaaactgtagtatatggataaaatgaccatacgattaca
tggatgagtataa*gtcaag
gtatatggataaaatcaccata
![MCj04325380000[1]](slide0033_image056.gif)
paralogous alignment
atggattagtataacgtcaggctaaactgtagtatatggataaaatgaccatacgattaca
local misalignment
tggattagtataacgtcagc
tatatggctaaaatgaccata
polymorphic test data
read
ref
attagtactaccatgtagtac
unaligned reads
