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Galaxy




  • Materials prepared by:
  • Warren C. Lathe III, Ph.D.
  • www.openhelix.com


  • Updated: Q4 2010
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Galaxy Agenda
  • Introduction and Credits
  • Interface
  • Getting Data
  • Preparing Data
  • Analyzing Data
  • Histories & Workflows
  • Summary
  • Exercise
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Galaxy Conceptual Framework
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Galaxy Start
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Galaxy Team
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Galaxy Publications
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Galaxy Screencasts
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Galaxy Agenda
  • Introduction and Credits
  • Interface
  • Getting Data
  • Preparing Data
  • Analyzing Data
  • Histories & Workflows
  • Summary
  • Exercise
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Galaxy Registration
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Galaxy Interface Sections
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Galaxy Interface Behavior
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Data Uploaded
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View Summary
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View Data
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Edit Attributes
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History and Workflow
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Galaxy Agenda
  • Introduction and Credits
  • Interface
  • Getting Data
  • Preparing Data
  • Analyzing Data
  • Histories & Workflows
  • Summary
  • Exercise
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Getting Data
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Getting Data: Table Browser
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Getting Data: UCSC Table Browser
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Getting Data: Send Table Results to Galaxy
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Getting Data: UCSC Table Browser Results
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Getting Data: Additional Data Sources
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Getting Data: Upload File
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Galaxy Agenda
  • Introduction and Credits
  • Interface
  • Getting Data
  • Preparing Data
  • Analyzing Data
  • Histories & Workflows
  • Summary
  • Exercise
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Preparing Data: Text Manipulation
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Preparing Data: Cut columns
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Preparing Data: Change Attributes
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Preparing Data: Change Format
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Preparing Data: Select Columns
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Preparing Data: Filtering and Sorting
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Preparing Data: Filter on Column
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Preparing Data: Change Name
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Preparing Data: Download second dataset
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Preparing Data: Download second dataset
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Preparing Data: Download second dataset
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Preparing Data: Liftover
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Preparing Data: Change Name
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Galaxy Agenda
  • Introduction and Credits
  • Interface
  • Getting Data
  • Preparing Data
  • Analyzing Data
  • Histories & Workflows
  • Summary
  • Exercise
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Analyzing Data: Getting Flanking regions
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Analyzing Data: Flanking regions
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Analyzing Data: Joining Two Datasets
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Analyzing Data: Joining Two Datasets
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Analyzing Data: Viewing Data Analysis
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Analyzing Data: Many Analysis Tools
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Analyzing Data: Next Generation Sequencing
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Galaxy Agenda
  • Introduction and Credits
  • Interface
  • Getting Data
  • Preparing Data
  • Analyzing Data
  • Histories & Workflows
  • Summary
  • Exercise
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History: Name History
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History: Name History & Add Tags
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History: Name History
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History: History Options
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History: Saved Histories
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History: Share, Rename, Delete History
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History: Share History
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History: View Deleted Datasets
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Workflow: Create Workflow from History
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Workflow: View and Run Workflows
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Workflow: Create New Workflow
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Workflow: Edit Workflow
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Workflow: Add Filter
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Workflow: Workflow Layout
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Workflow: Input Data and Connect Steps
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Workflow: Add Additional Steps, Flanks
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Workflow: Save and Close
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Workflow: Add to Menu
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Workflow: View from Menu
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Workflow: Add Dataset Input
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Workflow: Run Workflow
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Workflow: Get Resulting Data!
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Galaxy Agenda
  • Introduction and Credits
  • Interface
  • Getting Data
  • Preparing Data
  • Analyzing Data
  • Histories & Workflows
  • Summary
  • Exercise
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Galaxy Interface
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Galaxy
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Histories
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Workflows
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Galaxy Agenda
  • Introduction and Credits
  • Interface
  • Getting Data
  • Preparing Data
  • Analyzing Data
  • Histories & Workflows
  • Summary
  • Exercise
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