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Getting Data: UCSC Table Browser
Get Output
clade: Mammal genome: Human
assembly: Mar. 2006
group: Genes and… track: UCSC Genes
table: knownGene
region: position, chrX
Output format: BED, and check Send output to Galaxy
The Table Browser
Interface will now appear.
We are going to get
known gene data from the human X chromosome. To do so, we’ll just choose the
right data set: Human genome assembly “Mar. 2006” and the “UCSC Genes”
dataset from the “Genes and Gene Prediction Tracks” group.
We’ll put the
position “chrX.”
Leaving all the rest
as default, including the output format as BED and the “Send output to
Galaxy” checkbox checked, we’ll click the link “Get Output.”