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FrameAlign
creates an optimal alignment
of the best segment of
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similarity (local
alignment) between a protein sequence and the
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codons in all
possible reading frames on a single strand of a
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nucleotide
sequence. Optimal alignments may include reading
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frame shifts.
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Query:Nucleotide
sequence
Against:Protein sequence
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FrameAlign
always finds an alignment for any protein and nucleotide sequences
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you
compare, even if there is no significant similarity between them. You must
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evaluate
the results critically to decide if the segment shown is not just a random
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region of
relative similarity
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