STEMLOOP
You specify the minimum stem length (number of nucleotides in a paired stretch), minimum and maximum loop sizes, and the minimum number of bonds
per stem (length of nucleotide sequence between the
paired regions).
Vertical bars ('|') indicating
the base pairs. The associated loop is shown to the right of the stem. If
either the stem
or loop is too long to be displayed in its entirety on the line, then only
that part that fits on the line is shown. The first and last coordinates of
the stem are displayed on the left, and the length of the stem (size), the number of bonds in the
stem (quality), and the loop size are shown on the right.
217 AGGCTGCAGTG AGCCGTGAT
11, 25
|||||| |||| C
257
TCCGGCCTCAC GTCACCGCG
start
end
quality
size
stem
