STEMLOOP
Output formats
221 TGCAGTG
AGCCGTG 7, 18
|||||||
248 ACGTCAC CGCGCTA 14
Loop Start End Size Quality
1
35 54 8 18
*.stem
*.pnt à
DOTPLOT
1) See the stems
2) See the
stem coordinates
3) File the
stems (*.fld)
4) File the
stems as points for DOTPLOT
5) Choose new
parameters
6) Get a
different sequence
Sort stems
by:
1)
Position
2)
Quality
3) Size