STEMLOOP
Output formats
1) See the stems
2) See the stem coordinates
3) File the stems (*.fld)
4) File the stems as points for DOTPLOT
5) Choose new parameters
6) Get a different sequence
Sort stems by:
       1) Position
       2) Quality
       3) Size
221 TGCAGTG AGCCGTG 7, 18
    |||||||
248 ACGTCAC CGCGCTA 14
Loop Start End Size Quality
 1    35    54   8     18
*.stem
*.pnt à DOTPLOT