IRIX (gcg2)

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IRIX Release 6.4 IP27 gcg2
Copyright 1987-1997 Silicon Graphics, Inc. All Rights Reserved.
Last login: Sun Oct 15 22:25:34 CST 2000 by UNKNOWN@210.208.177.94
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*               WELCOME TO THE NHRI GCG SERVER !                     *
*                                                                    *
*                                                                    *
*          Type  go  to start the GCG Package !                      *
*               ===                                                  *
*                                                                    *
*          Type  gcgm  to start the manual driven GCG Package !      *
*                ===                                                 *
*                                                                    *
*  Online help: % genhelp or http://gcg.nhri.org.tw                  *
*                                                                    *
*  problem report by email: gcg@nhri.org.tw                          *
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**********************************************************************
gcg2 1% go
                     Welcome to the WISCONSIN PACKAGE
                           Version 10.1-UNIX
                             Installed on irix

           Copyright (c) 1982-2000, Genetics Computer Group, Inc.
 A wholly owned subsidiary of Oxford Molecular Group, Inc. All rights reserved.

          Published research assisted by this software should cite:
 Wisconsin Package Version 10.1, Genetics Computer Group (GCG), Madison, Wisc.

        Databases available:
                GenBank               Release  118.0  (06/2000)
                EMBL (Abridged)       Release   62.0  (03/2000)
                PIR-Protein           Release   65.0  (06/2000)
                NRL_3D                Release   27.0  (03/2000)
                SWISS-PROT            Release   39.0  (06/2000)
                SP-TREMBL             Release   14.0  (06/2000)
                PROSITE               Release   16.0  (07/1999)
                Restriction Enzymes (REBASE)          (06/2000)

        Technical support: phone (608) 231-5200 or e-mail Help@GCG.Com

             Online help: % genhelp or http://www.gcg.com/genhelp/
             GCG System Support Environment Initialized.
gcg2 4% stringsearch

StringSearch identifies sequences by searching for character patterns
such as "globin" or "human" in the sequence documentation.

 STRINGSEARCH through what sequence(s) (* GenEMBL:* *) ?  swissprot:*

 Do you want to search through:

     A) definitions
     B) complete sequence annotation

 Please choose one (* A *):

 Search for what text patterns ?  npm

 What should I call the output file (* swissprot.strings *) ?

 *** Sw:Npm_Chick ***

P16039 gallus gallus (chicken). nucleophosmin (npm) (nucleolar phosphoprotein b2
3) (numatrin) (nucleolar protein no38). 5/2000 294aa

 *** Sw:Npm_Human ***

P06748 homo sapiens (human). nucleophosmin (npm) (nucleolar phosphoprotein b23)
(numatrin) (nucleolar protein no38). 5/2000 294aa

 *** Sw:Npm_Mouse ***

Q61937 mus musculus (mouse). nucleophosmin (npm) (nucleolar phosphoprotein b23)
(numatrin) (nucleolar protein no38). 5/2000 292aa

 *** Sw:Npm_Rat ***

P13084 rattus norvegicus (rat). nucleophosmin (npm) (nucleolar phosphoprotein b2
3) (numatrin) (nucleolar protein no38). 5/2000 292aa

 *** Sw:Npm_Xenla ***

P07222 xenopus laevis (african clawed frog). nucleophosmin (npm) (nucleolar phos
phoprotein b23) (numatrin) (nucleolar protein no38). 5/2000 299aa


     Sequences searched:    86593
 Sequences with matches:        5
        Patterns sought:      npm

            Output file: swissprot.strings

gcg2 5% cat swissprot.strings
!!SEQUENCE_LIST 1.0
! STRINGSEARCH from: swissprot:*  October 15, 2000 22:39

! searching for: "npm"           ..

Sw:Npm_Chick         P16039 gallus gallus (chicken). nucleophosmin (npm) (nucleo
lar phosphoprotein b23) (numatrin) (nucle
Sw:Npm_Human         P06748 homo sapiens (human). nucleophosmin (npm) (nucleolar
 phosphoprotein b23) (numatrin) (nucleola
Sw:Npm_Mouse         Q61937 mus musculus (mouse). nucleophosmin (npm) (nucleolar
 phosphoprotein b23) (numatrin) (nucleola
Sw:Npm_Rat           P13084 rattus norvegicus (rat). nucleophosmin (npm) (nucleo
lar phosphoprotein b23) (numatrin) (nucle
Sw:Npm_Xenla         P07222 xenopus laevis (african clawed frog). nucleophosmin
(npm) (nucleolar phosphoprotein b23) (num
! Sequences searched: 86593
gcg2 6%