Preparing an Alignment as a Figure
SeqWEB
Save as html format
GCG Unix
Use Prettybox to build a postscript file
Transfer to PC
Open with Graphic softwares
Done by hand with a word processor
Transfer *.pair or *.msf files to PC
Set font to Courier or other fixed spacing font
Use shaded boxes to highlight important domains
Use color sparingly, red for the most important feature