Databases available for BLAST
search
Protein Sequence Databases
nr
All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
month
All new or revised GenBank
CDS translation+PDB+SwissProt+PIR+PRF released in the last 30 days.
swissprot
the last major release of the
SWISS-PROT protein sequence database (no updates)
yeast
Yeast (Saccharomyces
cerevisiae) protein sequences.
E. coli
E. coli genomic CDS
translations
pdb
Sequences derived from the
3-dimensional structure Brookhaven Protein Data Bank
Nucleotide Sequence Databases
nr
All Non-redundant
GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS, or HTGS sequences)
month
All new or revised
GenBank+EMBL+DDBJ+PDB sequences released in the last 30 days.
dbest
Non-redundant Database of
GenBank+EMBL+DDBJ EST Divisions
dbsts
Non-redundant Database of
GenBank+EMBL+DDBJ STS Divisions
yeast
Yeast (Saccharomyces
cerevisiae) genomic nucleotide sequences
E. coli
E. coli genomic nucleotide
sequences
