Secondary “pattern” database:
PROSITE : SWISS-PROT;
regular expression (patterns)
PRINTS : OWL; aligned
motifs (fingerprints)
Pfam : SWISS-PROT;
Hidden Markov Models (HMMs)
BLOCKS : PROSITE +
PRINTS; aligned motifs (blocks)
IDENTIFY : BLOCKS + PRINTS;
fuzzy regular expressions
(patterns)