Protein Sequence Analysis in GCG
1.* CoilScan - Locates coiled-coil segments in protein
sequences.
2.* HelicalWheel - plots a peptide sequence as a helical wheel.
3. HTHScan - Scans for helix-turn-helix motif.
4.* Isoelectric - Plots the charge as a function of pH for
peptide sequence.
5.* Moment - Plots the helical hydrophobic moment of a
peptide sequence.
6.
Motifs - searching through proteins for the patterns
defined in the PROSITE.
7.
PepPlot
- plots protein secondary structure and hydrophobicity in panels.
8.
PeptideMap - Creates a map of an amino acid
sequence.
9.
PeptideSort - Shows fragments from a digest of an amino
acid sequence.
10. PeptideStructure - Makes secondary structure predictions for a
peptide sequence.
*
11. PlotStructure - Plots secondary structure from
PeptideStructure output.
12. ProfileScan - Uses a database of profiles to find motifs
in protein sequences.
13. Seg - Replaces low
complexity regions in protein sequences with X characters.
14. SPScan
- Scans protein sequences for secretory signal peptides
15. Xnu
- Replaces tandem repeats in protein sequences with X characters.