Done by hand with a word processor
Transfer *.pair or *.msf files to PC
Set font to Courier or other fixed spacing font
Use shaded boxes to highlight important domains
Use color sparingly, red for the most important feature
Preparing
an Alignment as a Figure
GCG Unix
Use Prettybox to build a postscript file
Transfer to PC
Open with Graphic softwares
SeqWEB
Save as html format
GenDoc
A free msf file viewer and editor.
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