gcg% gelenter
–check
Minimal Syntax: % gelenter [-INfile1=]mu*.seq
Prompted Parameters: None
Local Data Files:
set.keys (must be in your current working directory to be used)
Optional Parameters:
-ENTER=mu*.seq
enters existing files into the database
-STAden
enters existing Staden format files into the
database
-FASTA
enters existing FASTA format files into the
database
-SINGlecommand
automatically returns to screen mode after each command
-PERFect
sets find to search for perfect symbol matches
-VECtors=gb:synpbr322 highlights sequences from pBR322
-SITes=gaattc
highlights GAATTC patterns
-LANes=g,A,T,C
sets lane order for digitizer
-MINOverlap=10
sets minimum overlap length for Reload command
-PCTOverlap=95
sets stringency for the Reload command
-TOLerance=0.4
sets tolerance for digitizing ambiguity (0 to 1),
with 1 being the most tolerant