Protein
Sequence Analysis in GCG
1.* CoilScan - Locates
coiled-coil segments in protein sequences.
2.* HelicalWheel - plots a peptide
sequence as a helical wheel.
3. HTHScan - Scans for
helix-turn-helix motif.
4.* Isoelectric - Plots the
charge as a function of pH for peptide sequence.
5.* Moment - Plots the
helical hydrophobic moment of a peptide sequence.
6. Motifs - searching
through proteins for the patterns defined in the PROSITE.
7. PepPlot - plots protein secondary structure and
hydrophobicity in panels.
8. PeptideMap - Creates a map
of an amino acid sequence.
9. PeptideSort - Shows fragments
from a digest of an amino acid sequence.
10. PeptideStructure - Makes secondary
structure predictions for a peptide sequence.
* 11. PlotStructure - Plots secondary
structure from PeptideStructure output.
12. ProfileScan - Uses a database
of profiles to find motifs in protein sequences.
13. Seg - Replaces low
complexity regions in protein sequences with X characters.
14. SPScan - Scans protein sequences for secretory
signal peptides
15. Xnu - Replaces tandem repeats in protein
sequences with X characters.