1. MEME:
Find conserved motifs in a group
of unaligned sequences similarity between two sequences.
2. NoOverlap:
Identify the places where a group
of nucleotide sequences do not share any common subsequences.
3. OldDistances:
Make a table of the pairwise similarities within a
group of aligned sequences.
4. Overlap:
Compare two sets of DNA sequences to each other echo in
both orientations.
5. PileUp:
Create a multiple sequence alignment from a group of
related sequences.
6. PlotSimilarity:
Plot the running average of the similarity among
multiple sequence alignment.
7. Pretty:
Display multiple sequence alignments and calculates a
consensus sequence.
8. PrettyBox :
Display multiple sequence alignments in PostScript
format.
9. ProfileGap:
Make an optimal alignment between a profile and one or
more sequences.
10. ProfileMake:
Create a position-specific scoring table, called a
profile.
Multiple Sequence Alignment
