Vertical bars ('|') indicating the base pairs.
The associated loop is shown to the right of the stem.
The first and last coordinates of the stem are displayed on the left.
The length of the stem (size),
the number of bonds in the stem (quality),
and the loop size are shown on the right.
Loop   Start      End       Size      Quality
1       217       257        11          25
2       135       160        11          22
3       139       160         8          20
4        69        95         7          20
5         4        25         9          20
6       213       247         8          19
7       221       248         7          18
8        35        54         8          18
    217 AGGCTGCAGTG  AGCCGTGAT    11, 25
        |||||| ||||           C
    257 TCCGGCCTCAC  GTCACCGCG    19
    135 TAGCCGGGCGT  GG    11, 22
        ||| || ||||
    160 GTCCGCGCGCG  GT    4
 
STEM LOOP output file