High-performance
bioinformatics
instrumentation
bioinformatics
instrumentation
• Parallelization of key bioinformatics
algorithms on high-performance machines
algorithms on high-performance machines
• Cellular multiprocessor
system–on-a-chip
(SOC) for biological pattern recognition
(SOC) for biological pattern recognition
Array and
EST Informatics
• Clustering and
classification
• EST Software
Pipeline
• Common regulatory
element finding
In-Silicon Biological
Structure and Process
Modeling / Simulation
Structure and Process
Modeling / Simulation
• regulatory pathway
modeling
• protein structure
dynamics and simulation
• pathway database for
modeling/simulation
Comparative
Genomics
• whole genome
alignment
• SNP and Haplotype
detection
• dictionary-based genome
analysis
• meta-genome analysis
• Protein function
identification
• visualization
• Gene finding
Some Current Research Focus Areas