#
# Gnu Cygwin Makefile for PHYLIP 3.6.

PACKAGE=phylip
VERSION=3.67

# You should not need to change anything, though if you want you could
# change the first (noncomment) statements to some directory locations
# that might be more useful.
# The archives when extracted put the source code into a directory ./src,
# and also puts the documentation web pages into ./exe, and makes a directory
# ./exe for the final executables.  Only change the definition of EXEDIR
# if you want something different from that structure.
#
# If it causes trouble in compiling, the CFLAGS statement below may also need
# to be changed.
#
#  To use the PHYLIP v3.6 Makefile, type
#      make install       to compile the whole package, install
#                           the executables in $(EXEDIR), and
#                           remove the object files to save space
#      make all           to compile the whole package but not install it
#                           or remove the object files
#      make put           to move the executables into $(EXEDIR)
#      make clean         to remove all object files and executables from the
#                           current directory
#      make dnaml         to compile and link one program, (in this example,
#                           DnaML) and leave the executable and object files
#                           in the current directory (where the source code is).
#                           You will have to move the executable into the
#                           executables directory (e.g. "mv dnaml ../exe")
#                           Note that the program name should be lower case.
# 
# ----------------------------------------------------------------------------
#  (Starting here is the section where you may want to change things)
# ----------------------------------------------------------------------------
#
# these are the statements we have been talking about:
# one of the reasons for changing them would be to put the executables and/or
# the documentation on a different file system.
# The default configuration is to have within the overall PHYLIP
# directory three subdirectories:  "src" for source code, "exe" for the
# executables, and "doc" for the documentation files.
#
# the following specifies the directory where the executables will be placed
EXEDIR  = ../exe
#
# ----------------------------------------------------------------------------
#
# This is the CFLAGS statement:
#
# if these statements say "-g"  and that causes trouble, remove the "-g"
# if the "-lX11" does not work (X compiling not working), you may want to
# remove that switch or fix it.
#CFLAGS  = -g -w0
CFLAGS  = -g -mno-cygwin -DWIN32 -O1 -fomit-frame-pointer -ffast-math
#
# This is the DFLAGS statement
# the DFLAGS line is for compiling Drawtree and Drawgram with X windows
#DFLAGS  = -g -w0 -DX
DFLAGS  = -mno-cygwin -DWIN32 -O1 -fomit-frame-pointer -ffast-math
#
# The EFLAGS statement is used with DFLAGS for the final link
# of the DrawGram and DrawTree programs
# The following one is the one to use for recent Linux versions
#EFLAGS  =  -DX -L/usr/X11R6/lib -lX11
EFLAGS  = -mno-cygwin -O1 -fomit-frame-pointer -ffast-math
#
# it could instead be like this next line but without the "#" in front:
#CFLAGS  =
#DFLAGS  =
#
# ----------------------------------------------------------------------------
#  (After this point there should not be any reason to change anything)
# ----------------------------------------------------------------------------
#
LIBS    =
#CC        = cc
#  Specifies the C compiler.
CC        = gcc
#DC        = cc $(DFLAGS)
DC        = gcc $(DFLAGS)
#EC        = cc $(EFLAGS)
EC        = gcc $(EFLAGS)

WINDRES		= windres
#
#
# the list of programs
#
PROGS   =          clique.exe consense.exe contml.exe contrast.exe \
                   dnacomp.exe dnadist.exe dnainvar.exe dnaml.exe dnamlk.exe \
                   dnamove.exe dnapars.exe dnapenny.exe dolmove.exe \
                   dollop.exe dolpenny.exe drawgram.exe drawtree.exe \
                   factor.exe fitch.exe gendist.exe kitsch.exe mix.exe \
                   move.exe neighbor.exe pars.exe penny.exe proml.exe \
                   promlk.exe protdist.exe protpars.exe restdist.exe \
                   restml.exe retree.exe seqboot.exe treedist.exe


#
# general commands
#

#  The first target it executed if you just type "make".  It tells you how to
#  use the Makefile.
#
help:
	@echo ""
	@echo " To use the PHYLIP v3.6 Makefile, type"
	@echo "     make install       to compile the whole package and install"
	@echo "                          the executables in $(EXEDIR), and then"
	@echo "                          remove the object files to save space"
	@echo "     make all           to compile the whole package but not install it"
	@echo "                          or remove the object files"
	@echo "     make put           to move the executables into $(EXEDIR)"
	@echo "     make clean         to remove all object files and executables from the"
	@echo "                          current directory"
	@echo "     make dnaml         to compile and link one program, (in this example,"
	@echo "                          Dnaml) and leave the executable and object files"
	@echo "                          in the current directory (where the source code is)."
	@echo "                          You will have to move the executable into the"
	@echo "                          executables directory (e.g. \"mv dnaml $(EXEDIR)\")"
	@echo "                          Note that the program name should be lower case."
	@echo " "

# The following is so that a command like
# make dnaml 
# will actually do something usefull
.PHONY :    clique consense contml contrast dnacomp dnadist \
                   dnainvar dnaml dnamlk dnamove dnapars dnapenny \
                   dolmove dollop dolpenny factor fitch gendist kitsch \
                   mix move neighbor pars penny proml promlk protdist \
                   protpars restdist restml retree seqboot treedist \
                   drawgram drawtree
 
clique: clique.exe
consense: consense.exe
contml: contml.exe
contrast: contrast.exe
dnacomp: dnacomp.exe
dnadist: dnadist.exe
dnaml: dnaml.exe
dnamlk: dnamlk.exe
dnainvar: dnainvar.exe
dnamove: dnamove.exe
dnapars: dnapars.exe
dnapenny: dnapenny.exe
dolmove: dolmove.exe
dollop: dollop.exe
dolpenny: dolpenny.exe
drawgram: drawgram.exe
drawtree: drawtree.exe
factor: factor.exe
fitch: fitch.exe
gendist: gendist.exe
kitsch: kitsch.exe
mix: mix.exe
move: move.exe
neighbor: neighbor.exe
pars: pars.exe
penny: penny.exe
proml: proml.exe
promlk: promlk.exe
protdist: protdist.exe
protpars: protpars.exe
restdist: restdist.exe
restml: restml.exe
retree: retree.exe
seqboot: seqboot.exe
treedist: treedist.exe

introduce:
	@echo "Building PHYLIP version 3.6"

all:        introduce $(PROGS)
	@echo "Finished compiling."
	@echo ""

install:        all put clean
	@echo "Done."
	@echo ""

put:
	@echo "Stripping executables to save space"
	strip --strip-all *.exe 
	@echo "Installing PHYLIP v3.6 binaries in $(EXEDIR)"
	@mkdir -p $(EXEDIR)
	@cp $(PROGS) $(EXEDIR)
	@echo "Installing font files in $(EXEDIR)"
	@cp font* $(EXEDIR)
	@echo "Finished installation."
	@echo ""

clean:
	@echo "Removing object files to save space"
	@rm -f *.o
	@rm -f *.res
	@echo "Finished removing object files.  Now will remove"
	@echo "executable files from the current directory, but not from the"
	@echo "executables directory.  (If some are not here, the makefile"
	@echo "will terminate with an error message but this is not a problem)"
	@echo ""
	@echo "Removing executables from this directory"
	@rm -f $(PROGS)
	@echo "Finished cleanup."
	@echo ""

#
# compile the support files with the shared functions
#

phylip.o:     phylip.c phylip.h
	$(CC) $(CFLAGS) -c phylip.c

seq.o:        seq.c phylip.h seq.h
	$(CC) $(CFLAGS) -c seq.c

disc.o:   disc.c phylip.h disc.h
	$(CC) $(CFLAGS) -c disc.c

discrete.o:        discrete.c discrete.h phylip.h
	$(CC) $(CFLAGS) -c discrete.c

dollo.o:        dollo.c phylip.h dollo.h
	$(CC) $(CFLAGS) -c dollo.c

wagner.o:        wagner.c phylip.h wagner.h
	$(CC) $(CFLAGS) -c wagner.c

dist.o:   dist.c phylip.h dist.h
	$(CC) $(CFLAGS) -c dist.c

cont.o:       cont.c cont.h phylip.h
	$(CC) $(CFLAGS) -c cont.c

mlclock.o:	mlclock.c mlclock.h
	$(CC) $(CFLAGS) -c mlclock.c

moves.o:   moves.c phylip.h moves.h
	$(CC) $(CFLAGS) -c moves.c

printree.o: printree.c printree.h phylip.h
	$(CC) $(CFLAGS) -c printree.c

#
# compile the individual programs
#

clique.o:       clique.c disc.h phylip.h
	$(CC) $(CFLAGS) -c clique.c

clique.exe:       clique.o disc.o phylip.o clique.res 
	$(CC) $(CFLAGS) clique.o disc.o phylip.o clique.res -o clique $(LIBS)

cons.o:          cons.c cons.h phylip.h 
	$(CC) $(CFLAGS) -c cons.c

consense.o:     consense.c cons.c cons.h phylip.h
	$(CC) $(CFLAGS) -c consense.c

consense.exe:     consense.o consense.res phylip.o cons.o
	$(CC) $(CFLAGS) consense.o cons.o phylip.o consense.res -o consense $(LIBS)

contml.o:       contml.c cont.h phylip.h
	$(CC) $(CFLAGS) -c contml.c

contml.exe:       contml.o contml.res cont.o phylip.o
	$(CC) $(CFLAGS) contml.o cont.o phylip.o contml.res -o contml $(LIBS)

contrast.o:       contrast.c cont.h phylip.h
	$(CC) $(CFLAGS) -c contrast.c

contrast.exe:       contrast.o contrast.res cont.o phylip.o
	$(CC) $(CFLAGS) contrast.o cont.o phylip.o contrast.res -o contrast $(LIBS)

dnacomp.o:      dnacomp.c seq.h phylip.h
	$(CC) $(CFLAGS) -c dnacomp.c

dnacomp.exe:      dnacomp.o seq.o phylip.o dnacomp.res
	$(CC) $(CFLAGS) dnacomp.o seq.o phylip.o dnacomp.res -o dnacomp $(LIBS)

dnadist.o:      dnadist.c seq.h phylip.h
	$(CC) $(CFLAGS) -c dnadist.c

dnadist.exe:      dnadist.o seq.o phylip.o dnadist.res
	$(CC) $(CFLAGS) dnadist.o seq.o phylip.o dnadist.res -o dnadist $(LIBS)

dnainvar.o:      dnainvar.c seq.h phylip.h
	$(CC) $(CFLAGS) -c dnainvar.c

dnainvar.exe:      dnainvar.o seq.o phylip.o dnainvar.res
	$(CC) $(CFLAGS) dnainvar.o seq.o phylip.o dnainvar.res -o dnainvar $(LIBS)

dnaml.o:      dnaml.c seq.h phylip.h
	$(CC) $(CFLAGS) -c dnaml.c

dnaml.exe:      dnaml.o seq.o phylip.o dnaml.res
	$(CC) $(CFLAGS) dnaml.o seq.o phylip.o dnaml.res -o dnaml $(LIBS)

dnamlk.o: seq.h phylip.h mlclock.h printree.h

dnamlk.exe:      dnamlk.o seq.o phylip.o mlclock.o printree.o dnamlk.res
	$(CC) $(CFLAGS) $^ $(LIBS) -o $@

dnamove.o:      dnamove.c seq.h moves.h phylip.h
	$(CC) $(CFLAGS) -c dnamove.c

dnamove.exe:      dnamove.o seq.o moves.o phylip.o dnamove.res
	$(CC) $(CFLAGS) dnamove.o seq.o moves.o phylip.o dnamove.res -o dnamove $(LIBS)

dnapenny.o:      dnapenny.c seq.h phylip.h
	$(CC) $(CFLAGS) -c dnapenny.c

dnapenny.exe:      dnapenny.o seq.o phylip.o dnapenny.res
	$(CC) $(CFLAGS) dnapenny.o seq.o phylip.o dnapenny.res -o dnapenny $(LIBS)

dnapars.o:      dnapars.c seq.h phylip.h
	$(CC) $(CFLAGS) -c dnapars.c

dnapars.exe:      dnapars.o seq.o phylip.o dnapars.res
	$(CC) $(CFLAGS) dnapars.o seq.o phylip.o dnapars.res -o dnapars $(LIBS)

dolmove.o:       dolmove.c disc.h moves.h dollo.h phylip.h
	$(CC) $(CFLAGS) -c dolmove.c

dolmove.exe:       dolmove.o disc.o moves.o dollo.o phylip.o dolmove.res
	$(CC) $(CFLAGS) dolmove.o disc.o moves.o dollo.o phylip.o dolmove.res -o dolmove $(LIBS)

dollop.o:       dollop.c disc.h dollo.h phylip.h
	$(CC) $(CFLAGS) -c dollop.c

dollop.exe:       dollop.o disc.o dollo.o phylip.o dollop.res
	$(CC) $(CFLAGS) dollop.o disc.o dollo.o phylip.o dollop.res -o dollop $(LIBS)

dolpenny.o:       dolpenny.c disc.h dollo.h phylip.h
	$(CC) $(CFLAGS) -c dolpenny.c

dolpenny.exe:       dolpenny.o disc.o dollo.o phylip.o dolpenny.res
	$(CC) $(CFLAGS) dolpenny.o disc.o dollo.o phylip.o dolpenny.res -o dolpenny $(LIBS)

draw.o:   draw.c draw.h phylip.h 
	$(DC) -c -DWIN32 draw.c

draw2.o:   draw2.c draw.h phylip.h 
	$(DC) -c -DWIN32 draw2.c

drawgram.o:     drawgram.c draw.h phylip.h
	$(DC) -c -DWIN32 drawgram.c

drawgram.exe:     drawgram.o draw.o draw2.o phylip.o drawgram.res
	$(EC) -DWIN32 draw.o draw2.o drawgram.o phylip.o drawgram.res $(LIBS) -luser32 -lgdi32 -o drawgram

drawtree.o:     drawtree.c draw.h phylip.h
	$(DC) -c -DWIN32 drawtree.c

drawtree.exe:     drawtree.o draw.o draw2.o phylip.o drawtree.res
	$(EC) -DWIN32 draw.o draw2.o drawtree.o phylip.o drawtree.res $(LIBS) -luser32 -lgdi32 -o drawtree

factor.o:       factor.c phylip.h
	$(CC) $(CFLAGS) -c factor.c

factor.exe:       factor.o phylip.o factor.c factor.res
	$(CC) $(CFLAGS) factor.o phylip.o factor.res -o factor $(LIBS)

fitch.o:        fitch.c dist.h phylip.h
	$(CC) $(CFLAGS) -c fitch.c

fitch.exe:        fitch.o dist.o phylip.o fitch.res
	$(CC) $(CFLAGS) fitch.o dist.o phylip.o fitch.res -o fitch $(LIBS)

gendist.o:      gendist.c phylip.h
	$(CC) $(CFLAGS) -c gendist.c

gendist.exe:      gendist.o phylip.o gendist.res
	$(CC) $(CFLAGS) gendist.o phylip.o gendist.res -o gendist $(LIBS)

kitsch.o:        kitsch.c dist.h phylip.h
	$(CC) $(CFLAGS) -c kitsch.c

kitsch.exe:        kitsch.o dist.o phylip.o kitsch.res
	$(CC) $(CFLAGS) kitsch.o dist.o phylip.o kitsch.res -o kitsch $(LIBS)

mix.o:        mix.c disc.h wagner.h phylip.h
	$(CC) $(CFLAGS) -c mix.c

mix.exe:        mix.o disc.o wagner.o phylip.o mix.res
	$(CC) $(CFLAGS) mix.o disc.o wagner.o phylip.o mix.res -o mix $(LIBS)

move.o:        move.c disc.h moves.h wagner.h phylip.h
	$(CC) $(CFLAGS) -c move.c

move.exe:        move.o disc.o moves.o wagner.o phylip.o move.c move.res
	$(CC) $(CFLAGS) move.o disc.o moves.o wagner.o phylip.o move.res -o move $(LIBS)

neighbor.o:        neighbor.c dist.h phylip.h
	$(CC) $(CFLAGS) -c neighbor.c

neighbor.exe:        neighbor.o dist.o phylip.o neighbor.res 
	$(CC) $(CFLAGS) neighbor.o dist.o phylip.o neighbor.res -o neighbor $(LIBS)

pars.o:   pars.c discrete.c discrete.h phylip.h
	$(CC) $(CFLAGS) -c pars.c

pars.exe: pars.o pars.c discrete.o pars.res phylip.o
	$(CC) $(CFLAGS) pars.o discrete.o phylip.o pars.res -o pars $(LIBS)

penny.o:  penny.c disc.h wagner.h phylip.h
	$(CC) $(CFLAGS) -c penny.c

penny.exe:  penny.o disc.o wagner.o phylip.o penny.res
	$(CC) $(CFLAGS) penny.o disc.o wagner.o  phylip.o penny.res -o penny $(LIBS)

promlk.o: seq.h phylip.h mlclock.h printree.h

promlk.exe: promlk.o seq.o phylip.o mlclock.o printree.o promlk.res
	$(CC) $(CFLAGS) $^ $(LIBS) -o promlk

proml.o:      proml.c seq.h phylip.h
	$(CC) $(CFLAGS) -c proml.c

proml.exe:      proml.o seq.o phylip.o proml.res
	$(CC) $(CFLAGS) proml.o seq.o phylip.o proml.res -o proml $(LIBS)

protdist.o:      protdist.c seq.h phylip.h
	$(CC) $(CFLAGS) -c protdist.c

protdist.exe:      protdist.o seq.o phylip.o protdist.res
	$(CC) $(CFLAGS) protdist.o seq.o phylip.o protdist.res -o protdist $(LIBS)

protpars.o: protpars.c seq.h phylip.h
	$(CC) $(CFLAGS) -c protpars.c

protpars.exe: protpars.o seq.o phylip.o protpars.res
	$(CC) $(CFLAGS) protpars.o seq.o phylip.o protpars.res -o protpars $(LIBS)

restdist.o: restdist.c seq.h phylip.h
	 $(CC) $(CFLAGS) -c restdist.c

restdist.exe: restdist.o restdist.res seq.o phylip.o restdist.res
	$(CC) $(CFLAGS) restdist.o seq.o phylip.o restdist.res -o restdist $(LIBS)

restml.o: restml.c seq.h phylip.h
	 $(CC) $(CFLAGS) -c restml.c

restml.exe: restml.o seq.o phylip.o restml.res
	$(CC) $(CFLAGS) restml.o seq.o phylip.o restml.res -o restml $(LIBS)

retree.o:       retree.c moves.h phylip.h
	$(CC) $(CFLAGS) -c retree.c

retree.exe:       retree.o moves.o phylip.o retree.res
	$(CC) $(CFLAGS) retree.o moves.o phylip.o retree.res -o retree $(LIBS)

seqboot.o:      seqboot.c phylip.h
	$(CC) $(CFLAGS) -c seqboot.c

seqboot.exe:      seqboot.o seq.o phylip.o seqboot.res
	$(CC) $(CFLAGS) seqboot.o seq.o phylip.o seqboot.res -o seqboot $(LIBS)

treedist.o:     treedist.c cons.c cons.h phylip.h
	$(CC) $(CFLAGS) -c treedist.c

treedist.exe:     treedist.o phylip.o cons.o treedist.res
	$(CC) $(CFLAGS) treedist.o cons.o phylip.o treedist.res -o treedist $(LIBS)

%.res: icons/%.rc
	$(WINDRES) $< -O coff -o $@

#
# Targets for making the Windows distribution archives
#

DIST_COMMON = phylip.html 

DOCS= doc/clique.html doc/consense.html doc/contchar.html doc/contml.html \
      doc/contrast.html doc/discrete.html doc/distance.html doc/dnacomp.html \
      doc/dnadist.html doc/dnainvar.html doc/dnaml.html doc/dnamlk.html \
      doc/dnamove.html doc/dnapars.html doc/dnapenny.html doc/dollop.html \
      doc/dolmove.html doc/dolpenny.html doc/drawgram.html doc/draw.html \
      doc/drawtree.html doc/factor.html doc/fitch.html doc/gendist.html \
      doc/kitsch.html doc/main.html doc/mix.html doc/move.html \
      doc/neighbor.html doc/pars.html doc/penny.html doc/proml.html \
      doc/promlk.html doc/protdist.html doc/protpars.html doc/restdist.html \
      doc/restml.html doc/retree.html doc/seqboot.html doc/sequence.html \
      doc/treedist.html doc/phylip.gif

SOURCES= Makefile Makefile.bcc Makefile.cyg Makefile.msvc \
	 Makefile.osx compalpha.com linkmac clique.c cons.c consense.c cons.h cont.c \
	 cont.h contml.c contrast.c disc.c disc.h discrete.c discrete.h dist.c \
	 dist.h dnacomp.c dnadist.c dnainvar.c dnaml.c dnamlk.c dnamove.c \
	 dnapars.c dnapenny.c dollo.c dollo.h dollop.c dolmove.c dolpenny.c \
	 draw2.c draw.c drawgram.c draw.h drawtree.c factor.c fitch.c gendist.c \
	 interface.c interface.h io.h kitsch.c macface.c macface.h mix.c move.c \
	 moves.c moves.h neighbor.c newmove.c pars.c penny.c \
	 phylip.c phylip.h proml.c promlk.c protdist.c protpars.c restdist.c \
	 restml.c retree.c seqboot.c seq.c seq.h treedist.c wagner.c wagner.h \
	 mlclock.c mlclock.h printree.c printree.h \

ICONS= 		icons/boot.ico icons/clique.ico icons/clique.rc icons/clique.rcb icons/consense.ico \
		icons/consense.rc icons/consense.rcb icons/contml.ico icons/contml.rc icons/contml.rcb \
		icons/contrast.ico icons/contrast.rc icons/contrast.rcb icons/disc.ico icons/dist.ico icons/dna.ico \
		icons/dnacomp.rc icons/dnacomp.rcb icons/dnadist.rc icons/dnadist.rcb icons/dnainvar.rc \
		icons/dnainvar.rcb icons/dnaml.rc icons/dnaml.rcb icons/dnamlk.rc icons/dnamlk.rcb icons/dnamove.rc \
		icons/dnamove.rcb icons/dnapars.rc icons/dnapars.rcb icons/dnapenny.rc icons/dnapenny.rcb \
		icons/dollo.ico icons/dollop.rc icons/dollop.rcb icons/dolmove.rc icons/dolmove.rcb \
		icons/dolpenny.rc icons/dolpenny.rcb icons/drawgram.ico icons/drawgram.rc icons/drawgram.rcb \
		icons/drawtree.ico icons/drawtree.rc icons/drawtree.rcb icons/factor.rc icons/factor.rcb \
		icons/fitch.rc icons/fitch.rcb icons/gendist.ico icons/gendist.rc icons/gendist.rcb icons/kitsch.rc \
		icons/kitsch.rcb icons/mix.rc icons/mix.rcb icons/move.rc icons/move.rcb icons/neighbor.rc \
		icons/neighbor.rcb icons/pars.rc icons/pars.rcb icons/penny.rc icons/penny.rcb icons/proml.rc \
		icons/proml.rcb icons/promlk.rc icons/promlk.rcb icons/protdist.rc icons/protdist.rcb \
		icons/protein.ico icons/protpars.rc icons/protpars.rcb icons/restdist.rc icons/restdist.rcb \
		icons/restml.rc icons/restml.rcb icons/restrict.ico icons/retree.ico icons/retree.rc \
		icons/retree.rcb icons/seqboot.rc icons/seqboot.rcb icons/treedist.ico icons/treedist.rc \
		icons/treedist.rcb

projects/PROJECTS= 	projects/clique.mcp.xml projects/consense.mcp.xml projects/contml.mcp.xml projects/contrast.mcp.xml \
		projects/dnacomp.mcp.xml projects/dnadist.mcp.xml projects/dnainvar.mcp.xml projects/dnaml.mcp.xml \
		projects/dnamlk.mcp.xml projects/dnamove.mcp.xml projects/dnapars.mcp.xml projects/dnapenny.mcp.xml \
		projects/dollop.mcp.xml projects/dolmove.mcp.xml projects/dolpenny.mcp.xml \
		projects/drawgram.mcp.xml projects/drawtree.mcp.xml projects/factor.mcp.xml projects/fitch.mcp.xml \
		projects/gendist.mcp.xml projects/kitsch.mcp.xml projects/mix.mcp.xml projects/move.mcp.xml \
		projects/neighbor.mcp.xml projects/pars.mcp.xml projects/penny.mcp.xml projects/proml.mcp.xml \
		projects/promlk.mcp.xml projects/protdist.mcp.xml projects/protpars.mcp.xml \
		projects/restdist.mcp.xml projects/restml.mcp.xml projects/retree.mcp.xml projects/seqboot.mcp.xml \
		projects/treedist.mcp.xml

WX_EXES = 	dnacomp.exe dnadist.exe dnainvar.exe dnaml.exe dnamlk.exe \
		dnamove.exe dnapars.exe dnapenny.exe proml.exe promlk.exe \
		protdist.exe protpars.exe restdist.exe restml.exe seqboot.exe

WY_EXES = 	clique.exe consense.exe contml.exe contrast.exe dollop.exe \
		dolmove.exe dolpenny.exe drawgram.exe drawtree.exe factor.exe \
		fitch.exe font1 font2 font3 font4 font5 font6 gendist.exe \
		kitsch.exe mix.exe move.exe neighbor.exe pars.exe penny.exe \
		retree.exe treedist.exe

.PHONY : phylipwdir phylipwxdir phylipwydir

zips : phylipw.zip phylipwx.zip phylipwy.zip

phylipw.zip : phylipwdir
	zip phylipw.zip phylipw/*
	rm -rf phylipw

phylipwdir : $(DOCS) $(SOURCES) $(ICONS) $(PROJECTS)
	rm -rf phylipw
	mkdir phylipw
	mkdir phylipw/src
	mkdir phylipw/doc
	mkdir phylipw/src/icons
	mkdir phylipw/src/projects
	for i in $(DIST_COMMON) ; do \
	  cp $$i phylipw ; \
	done
	for i in $(DOCS) ; do \
	  cp $$i phylipw/doc ; \
	done
	for i in $(SOURCES) ; do \
	  cp $$i phylipw/src ; \
	done
	for i in $(ICONS) ; do \
	  cp $$i phylipw/src/icons ; \
	done
	for i in $(PROJECTS) ; do \
	  cp $$i phylipw/projects ; \
	done
	mv phylipw/src/Makefile phylipw/src/Makefile.unix
	mv phylipw/src/Makefile.cyg phylipw/src/Makefile

phylipwx.zip : phylipwxdir
	zip phylipwx.zip phylipwx/*
	rm -rf phylipwx

phylipwxdir : $(WX_EXES)
	rm -rf phylipwx
	mkdir phylipwx
	mkdir phylipwx/exe
	for i in $(WX_EXES) ; do \
	  cp $$i phylipwx/exe ; \
	done

phylipwy.zip : phylipwydir
	zip phylipwy.zip phylipwy/*
	rm -rf phylipwy

phylipwydir : $(WY_EXES)
	rm -rf phylipwy
	mkdir phylipwy
	mkdir phylipwy/exe
	for i in $(WY_EXES) ; do \
	  cp $$i phylipwy/exe ; \
	done